Single-cell spatial explorer a software to to analyse the cells characteristics in relation with their position in any kind of biological tissue

Single-Cell Spatial Explorer allows the scientists to analyse the cells characteristics in relation with their position in any kind of biological tissue.  It is a software able to overlay layers of information on a tissue microscopy image such as cells gene expression, cells categories (clusters) and up to 29,000 biological functions.This is especially useful to understand many pathologies such as cancer biology for example.

Collaborations and acknowledgements

This work was supported by :

• the National Institute of Health and Medical Research (INSERM),
• Toulouse 3-Paul Sabatier University (UPS),
• the Centre National de la Recherche Scientifique (CNRS);
• Toulouse Cancer Laboratory of Excellence (TOUCAN-2) under ANR11-LABX grant contract;
• the ARC Foundation under grant contract PGA1-RF2019-0208691 ;
• the Toulouse-Oncopole University Cancer Institute under CIEL contract;
• the Carnot Lymphoma Institute under CALYM contract (collection).